STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47570.1Pfam:PF09594:Protein of unknown function DUF2029;UniPathway: UPA00949. (383 aa)    
Predicted Functional Partners:
AHY47063.1
secG: preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
   
 0.746
AHY45804.1
COG:COG0860: N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis outer membrane]; Pfam:PF01520:Cell wall hydrolase/autolysin, catalytic; SMART:SM00646:Cell wall hydrolase/autolysin, catalytic; SUPERFAMILY:SSF53187:No Description.
 
     0.593
AHY46971.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
 
  
 0.579
AHY47453.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF110849:ParB-like nuclease.
  
    0.546
AHY45342.1
Pfam:PF13517:Family description; SUPERFAMILY:SSF69318:No Description.
    
 
 0.536
AHY45609.1
TIGRFAM:TIGR04214:CSLREA domain; Pfam:PF00353:Haemolysin-type calcium-binding repeat; PRINTS:PR00313:NodO calcium binding signature; ProSitePatterns:PS00330:Hemolysin-type calcium-binding conserved site; SUPERFAMILY:SSF51126:Pectin lyase fold/virulence factor; CSLREA_Nterm.
    
 
 0.536
AHY46542.1
Subtilase family; COG:COG1404: Subtilisin-like serine proteases [Posttranslational modification protein turnover chaperones]; Pfam:PF00082:Peptidase S8/S53 domain; PRINTS:PR00723:Peptidase S8, subtilisin-related; ProSitePatterns:PS00137:Peptidase S8, subtilisin, His-active site; SUPERFAMILY:SSF52743:Peptidase S8/S53 domain; Belongs to the peptidase S8 family.
    
 
 0.536
truA
tRNA pseudouridine(38-40) synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.507
AHY46981.1
AAA domain (dynein-related subfamily); COG:COG0714: MoxR-like ATPases [General function prediction only]; Pfam:PF07728:ATPase, dynein-related, AAA domain; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
  
 0.469
AHY47451.1
COG:COG2129: Predicted phosphoesterases related to the Icc protein [General function prediction only]; Pfam:PF12850:Calcineurin-like phosphoesterase superfamily domain; Pfam:PF12850:Calcineurin-like phosphoesterase superfamily domain; SUPERFAMILY:SSF56300:No Description.
  
     0.445
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.