STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47617.1COG:COG1087: UDP-glucose 4-epimerase [Cell envelope biogenesis outer membrane]; Pfam:PF01370:NAD-dependent epimerase/dehydratase; Pfam:PF01370:NAD-dependent epimerase/dehydratase; SUPERFAMILY:SSF51735:No Description. (305 aa)    
Predicted Functional Partners:
AHY45743.1
TIGRFAM:TIGR03026:Nucleotide sugar dehydrogenase; COG:COG1004: Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis outer membrane]; Pfam:PF03721:UDP-glucose/GDP-mannose dehydrogenase, N-terminal; PIRSF:PIRSF000124:Nucleotide sugar dehydrogenase; SMART:SM00984:UDP-glucose/GDP-mannose dehydrogenase, C-terminal; SUPERFAMILY:SSF51735:No Description.
 
 0.942
AHY47102.1
TIGRFAM:TIGR01179:UDP-glucose 4-epimerase GalE; COG:COG1087: UDP-glucose 4-epimerase [Cell envelope biogenesis outer membrane]; Pfam:PF01370:NAD-dependent epimerase/dehydratase; SUPERFAMILY:SSF51735:No Description;KEGG: 00052; KEGG: 00520; MetaCyc: PWY-6317; UniPathway: UPA00214; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
0.923
AHY45778.1
COG:COG0451: Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF01370:NAD-dependent epimerase/dehydratase; Pfam:PF01370:NAD-dependent epimerase/dehydratase; SUPERFAMILY:SSF51735:No Description.
  
  
 
0.916
AHY47103.1
TIGRFAM:TIGR00209:Galactose-1-phosphate uridyl transferase, class I; COG:COG1085: Galactose-1-phosphate uridylyltransferase [Energy production and conversion]; Pfam:PF01087:Galactose-1-phosphate uridyl transferase, N-terminal; PIRSF:PIRSF000808:Galactose-1-phosphate uridyl transferase, class I; ProSitePatterns:PS00117:Galactose-1-phosphate uridyl transferase, class I His-active site; SUPERFAMILY:SSF54197:HIT-like domain;KEGG: 00052; KEGG: 00520; MetaCyc: PWY-6317; UniPathway: UPA00214; galT_1.
   
 
 0.905
AHY46221.1
NAD dependent epimerase/dehydratase family; COG:COG0451: Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF01370:NAD-dependent epimerase/dehydratase; SUPERFAMILY:SSF51735:No Description.
     
  0.900
AHY46555.1
NAD dependent epimerase/dehydratase family; COG:COG0451: Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF01370:NAD-dependent epimerase/dehydratase; SUPERFAMILY:SSF51735:No Description.
     
 
0.900
AHY47616.1
COG:COG3153: Predicted acetyltransferase [General function prediction only]; Pfam:PF13527:Acetyltransferase (GNAT) domain; Pfam:PF13527:Acetyltransferase (GNAT) domain; ProSiteProfiles:PS51186:GNAT domain; SUPERFAMILY:SSF55729:Acyl-CoA N-acyltransferase.
       0.773
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
  0.633
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.633
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.618
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.