STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47653.1Bacterial capsule synthesis protein PGA_cap; COG:COG2843: Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis outer membrane]; Pfam:PF09587:Capsule synthesis protein, CapA; SMART:SM00854:Capsule synthesis protein, CapA; SUPERFAMILY:SSF56300:No Description. (505 aa)    
Predicted Functional Partners:
AHY46527.1
COG:COG1488: Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]; Pfam:PF01729:Quinolinate phosphoribosyl transferase, C-terminal; Pfam:PF01729:Quinolinate phosphoribosyl transferase, C-terminal; PIRSF:PIRSF000484:Nicotinate phosphoribosyltransferase-related; SUPERFAMILY:SSF51690:Quinolinate phosphoribosyl transferase, C-terminal.
  
    0.666
AHY47654.1
COG:COG2124: Cytochrome P450 [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00067:Cytochrome P450; SUPERFAMILY:SSF48264:Cytochrome P450;Reactome: REACT_13433.
       0.513
AHY47652.1
COG:COG2860: Predicted membrane protein [Function unknown]; Pfam:PF03458:Uncharacterised domain UPF0126; Pfam:PF03458:Uncharacterised domain UPF0126.
       0.478
AHY46549.1
Cysteine-rich secretory protein family; COG:COG2340: Uncharacterized protein with SCP/PR1 domains [Function unknown]; Pfam:PF00188:CAP domain; SUPERFAMILY:SSF55797:CAP domain.
  
     0.433
AHY46514.1
VanW like protein; COG:COG2720: Uncharacterized vancomycin resistance protein [Defense mechanisms]; Pfam:PF04294:Vancomycin resistance VanW.
  
     0.422
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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