STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47654.1COG:COG2124: Cytochrome P450 [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00067:Cytochrome P450; SUPERFAMILY:SSF48264:Cytochrome P450;Reactome: REACT_13433. (419 aa)    
Predicted Functional Partners:
AHY47087.1
COG:COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication recombination and repair]; Pfam:PF00476:DNA-directed DNA polymerase, family A, palm domain; PRINTS:PR00868:DNA polymerase A; ProSitePatterns:PS00447:DNA-directed DNA polymerase, family A, conserved site; SMART:SM00475:5'-3' exonuclease, N-terminal; SUPERFAMILY:SSF56672:No Description.
    
 0.880
AHY45894.1
TIGRFAM:TIGR01746:Thioester reductase domain; COG:COG3320: Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; ProSitePatterns:PS00012:Phosphopantetheine attachment site; ProSiteProfiles:PS50075:Acyl carrier protein-like; SMART:SM00823:Polyketide synthase, phosphopantetheine-binding domain; SUPERFAMILY:SSF56801:No Description.
  
 
 0.864
AHY45414.1
TIGRFAM:TIGR01426:UDP-glycosyltransferase, MGT; COG:COG1819: Glycosyl transferases related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]; Pfam:PF00201:UDP-glucuronosyl/UDP-glucosyltransferase; SUPERFAMILY:SSF53756:No Description;KEGG: 00051; KEGG: 00510; KEGG: 00512; KEGG: 00513; KEGG: 00514; KEGG: 00522; KEGG: 00524; KEGG: 00533; KEGG: 00540; KEGG: 00550; KEGG: 00561; KEGG: 00563; KEGG: 00600; KEGG: 00601; KEGG: 00603; KEGG: 00604; KEGG: 00906; KEGG: 00908; KEGG: 00941; KEGG: 00942; KEGG: 00944; KEGG: 00945; KEGG: 00965.
  
 
 0.817
AHY47651.1
Ferredoxin; COG:COG0633: Ferredoxin [Energy production and conversion]; Pfam:PF00111:2Fe-2S ferredoxin-type domain; Pfam:PF00111:2Fe-2S ferredoxin-type domain; ProSiteProfiles:PS51085:2Fe-2S ferredoxin-type domain; SUPERFAMILY:SSF54292:2Fe-2S ferredoxin-type domain.
  
 0.810
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.693
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.674
AHY45361.1
COG:COG0671: Membrane-associated phospholipid phosphatase [Lipid metabolism]; Pfam:PF01569:Phosphatidic acid phosphatase type 2/haloperoxidase; Pfam:PF01569:Phosphatidic acid phosphatase type 2/haloperoxidase; SMART:SM00014:Phosphatidic acid phosphatase type 2/haloperoxidase; SUPERFAMILY:SSF48317:Phosphatidic acid phosphatase type 2/haloperoxidase.
 
 
  0.531
AHY47160.1
COG:COG0025: NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]; Pfam:PF00999:Cation/H+ exchanger; Pfam:PF00999:Cation/H+ exchanger.
  
 
   0.515
AHY47653.1
Bacterial capsule synthesis protein PGA_cap; COG:COG2843: Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis outer membrane]; Pfam:PF09587:Capsule synthesis protein, CapA; SMART:SM00854:Capsule synthesis protein, CapA; SUPERFAMILY:SSF56300:No Description.
       0.513
AHY47419.1
YihY family inner membrane protein; TIGRFAM:TIGR00765:Virulence factor BrkB; COG:COG1295: Predicted membrane protein [Function unknown]; Pfam:PF03631:Virulence factor BrkB; PIRSF:PIRSF035875:Virulence factor BrkB; yihY_not_rbn.
  
    0.510
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (24%) [HD]
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