STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47670.1Transport-energizing ATPase, TRC40/GET3/ArsA family; TIGRFAM:TIGR00345:Arsenical pump ATPase, ArsA/GET3; COG:COG0003: Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]; Pfam:PF02374:Anion-transporting ATPase-like domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; GET3_arsA_TRC40. (323 aa)    
Predicted Functional Partners:
AHY47667.1
COG:COG1966: Carbon starvation protein predicted membrane protein [Signal transduction mechanisms]; Pfam:PF02554:Carbon starvation protein CstA; Pfam:PF02554:Carbon starvation protein CstA.
     0.953
AHY47669.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
 
     0.950
AHY47668.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.778
AHY47666.1
Pfam:PF01243:Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SUPERFAMILY:SSF50475:FMN-binding split barrel;UniPathway: UPA00190; UniPathway: UPA00190.
       0.558
aspS
aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
 
 
    0.510
AHY47975.1
ATPase family associated with various cellular activities (AAA); COG:COG1222: ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification protein turnover chaperones]; Pfam:PF00004:ATPase, AAA-type, core; ProSitePatterns:PS00674:ATPase, AAA-type, conserved site; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
 
 0.466
AHY45796.1
TIGRFAM:TIGR02127:Orotidine 5'-phosphate decarboxylase, type 2; COG:COG0284: Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]; Pfam:PF00215:Orotidine 5'-phosphate decarboxylase domain; SMART:SM00934:Orotidine 5'-phosphate decarboxylase domain; SUPERFAMILY:SSF51366:Ribulose-phosphate binding barrel;KEGG: 00240; MetaCyc: PWY-5686; UniPathway: UPA00070; pyrF_sub2.
    
 
 0.432
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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