STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47679.1GlcNAc-PI de-N-acetylase; COG:COG2120: Uncharacterized proteins LmbE homologs [Function unknown]; Pfam:PF02585:N-acetylglucosaminyl phosphatidylinositol deacetylase; SUPERFAMILY:SSF102588:Putative deacetylase LmbE-like domain. (282 aa)    
Predicted Functional Partners:
AHY47680.1
COG:COG0438: Glycosyltransferase [Cell envelope biogenesis outer membrane]; Pfam:PF00534:Glycosyl transferase, family 1; Pfam:PF00534:Glycosyl transferase, family 1; SUPERFAMILY:SSF53756:No Description.
 
  
 0.949
AHY47682.1
Hypothetical protein; COG:COG1944: Uncharacterized conserved protein [Function unknown]; Pfam:PF02624:YcaO-like; Pfam:PF02624:YcaO-like.
 
     0.949
AHY47681.1
COG:COG1082: Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Pfam:PF01261:Xylose isomerase-like, TIM barrel domain; Pfam:PF01261:Xylose isomerase-like, TIM barrel domain; SUPERFAMILY:SSF51658:Xylose isomerase-like, TIM barrel domain.
 
     0.939
AHY47683.1
Oxidoreductase family, NAD-binding Rossmann fold; COG:COG0673: Predicted dehydrogenases and related proteins [General function prediction only]; Pfam:PF01408:Oxidoreductase, N-terminal; SMART:SM00849:Beta-lactamase-like; SUPERFAMILY:SSF51735:No Description.
 
  
 0.925
AHY47686.1
COG:COG1260: Myo-inositol-1-phosphate synthase [Lipid metabolism]; Pfam:PF07994:Myo-inositol-1-phosphate synthase; Pfam:PF07994:Myo-inositol-1-phosphate synthase; PIRSF:PIRSF015578:Myo-inositol-1-phosphate synthase; SUPERFAMILY:SSF51735:No Description.
 
   
 0.892
AHY47685.1
HD domain; COG:COG1896: Predicted hydrolases of HD superfamily [General function prediction only]; Pfam:PF13023:HD domain; SUPERFAMILY:SSF109604:No Description.
       0.793
AHY47684.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF53335:No Description.
       0.780
AHY47678.1
COG:COG0266: Formamidopyrimidine-DNA glycosylase [DNA replication recombination and repair]; Pfam:PF06831:DNA glycosylase/AP lyase, H2TH DNA-binding; Pfam:PF06831:DNA glycosylase/AP lyase, H2TH DNA-binding; ProSiteProfiles:PS51068:DNA glycosylase/AP lyase, catalytic domain; SMART:SM00898:DNA glycosylase/AP lyase, catalytic domain; SUPERFAMILY:SSF81624:DNA glycosylase/AP lyase, catalytic domain; Belongs to the FPG family.
       0.773
AHY45745.1
COG:COG1514: 2'-5' RNA ligase [Translation ribosomal structure and biogenesis]; Pfam:PF13563:2'-5' RNA ligase superfamily; SUPERFAMILY:SSF55144:RNA ligase/cyclic nucleotide phosphodiesterase.
  
     0.754
AHY47272.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
     0.748
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.