STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47704.1COG:COG1403: Restriction endonuclease [Defense mechanisms]; Pfam:PF01844:HNH endonuclease; Pfam:PF01844:HNH endonuclease; SMART:SM00507:HNH nuclease. (180 aa)    
Predicted Functional Partners:
AHY47703.1
COG:COG0714: MoxR-like ATPases [General function prediction only]; Pfam:PF07726:ATPase, AAA-3; Pfam:PF07726:ATPase, AAA-3; PIRSF:PIRSF002849:ATPase chaperone, AAA-type, MoxR, predicted; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
    0.549
AHY47701.1
COG:COG1305: Transglutaminase-like enzymes putative cysteine proteases [Amino acid transport and metabolism]; Pfam:PF01841:Transglutaminase-like; SMART:SM00460:Transglutaminase-like; SUPERFAMILY:SSF54001:No Description.
       0.547
AHY47702.1
COG:COG1721: Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]; Pfam:PF01882:Domain of unknown function DUF58; Pfam:PF01882:Domain of unknown function DUF58.
       0.538
AHY45492.1
COG:COG0863: DNA modification methylase [DNA replication recombination and repair]; Pfam:PF01555:DNA methylase N-4/N-6; Pfam:PF01555:DNA methylase N-4/N-6; PRINTS:PR00508:Restriction/modification DNA-methylase; ProSitePatterns:PS00092:DNA methylase, N-6 adenine-specific, conserved site; SUPERFAMILY:SSF53335:No Description; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.491
AHY47705.1
COG:COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Pfam:PF00072:Signal transduction response regulator, receiver domain; Pfam:PF00072:Signal transduction response regulator, receiver domain; ProSiteProfiles:PS50110:Signal transduction response regulator, receiver domain; SMART:SM00448:Signal transduction response regulator, receiver domain; SUPERFAMILY:SSF52172:CheY-like superfamily.
       0.461
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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