STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47744.1COG:COG1129: ABC-type sugar transport system ATPase component [Carbohydrate transport and metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase. (533 aa)    
Predicted Functional Partners:
AHY47745.1
Periplasmic binding protein domain; COG:COG1879: ABC-type sugar transport system periplasmic component [Carbohydrate transport and metabolism]; Pfam:PF13407:Periplasmic binding protein domain; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF53822:No Description.
 
 0.998
AHY47743.1
COG:COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components [Carbohydrate transport and metabolism]; Pfam:PF02653:ABC transporter, permease; Pfam:PF02653:ABC transporter, permease.
 
 0.990
AHY45393.1
COG:COG4603: ABC-type uncharacterized transport system permease component [General function prediction only]; Pfam:PF02653:ABC transporter, permease; Pfam:PF02653:ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family.
     0.799
AHY45392.1
COG:COG1079: Uncharacterized ABC-type transport system permease component [General function prediction only]; Pfam:PF02653:ABC transporter, permease; Pfam:PF02653:ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family.
     0.772
AHY45395.1
COG:COG1744: Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein [General function prediction only]; Pfam:PF02608:Basic membrane lipoprotein; Pfam:PF02608:Basic membrane lipoprotein; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.
     0.730
rbsK
Sugar kinases ribokinase family; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.606
AHY47741.1
COG:COG0554: Glycerol kinase [Energy production and conversion]; Pfam:PF00370:Carbohydrate kinase, FGGY, N-terminal; Pfam:PF00370:Carbohydrate kinase, FGGY, N-terminal; ProSitePatterns:PS00933:Carbohydrate kinase, FGGY, conserved site; SUPERFAMILY:SSF53067:No Description.
  
  
 0.595
AHY46127.1
COG:COG1609: Transcriptional regulators [Transcription]; Pfam:PF13377:Periplasmic binding protein-like domain; Pfam:PF13377:Periplasmic binding protein-like domain; ProSiteProfiles:PS50932:Transcription regulator HTH, LacI; SMART:SM00354:Transcription regulator HTH, LacI; SUPERFAMILY:SSF53822:No Description.
 
  
 0.563
AHY47746.1
Biotin-requiring enzyme; COG:COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) component and related enzymes [Energy production and conversion]; Pfam:PF00364:Biotin/lipoyl attachment; ProSitePatterns:PS00189:2-oxo acid dehydrogenase, lipoyl-binding site; ProSiteProfiles:PS50968:Biotin/lipoyl attachment; SUPERFAMILY:SSF51230:Single hybrid motif.
       0.526
AHY45814.1
COG:COG0524: Sugar kinases ribokinase family [Carbohydrate transport and metabolism]; Pfam:PF00294:Carbohydrate kinase PfkB; Pfam:PF00294:Carbohydrate kinase PfkB; ProSitePatterns:PS00583:Carbohydrate/puine kinase, PfkB, conserved site; SUPERFAMILY:SSF53613:No Description.
 
  
 0.524
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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