STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47785.1Flavin reductase like domain; COG:COG1853: Conserved protein/domain typically associated with flavoprotein oxygenases DIM6/NTAB family [General function prediction only]; Pfam:PF01613:Flavin reductase-like, FMN-binding; SUPERFAMILY:SSF50475:FMN-binding split barrel. (203 aa)    
Predicted Functional Partners:
AHY47784.1
COG:COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]; Pfam:PF01546:Peptidase M20; Pfam:PF01546:Peptidase M20; PIRSF:PIRSF037238:Peptidase M20, glutamate carboxypeptidase; SUPERFAMILY:SSF53187:No Description.
       0.736
AHY47783.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.733
AHY47782.1
COG:COG0589: Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]; Pfam:PF00582:UspA; Pfam:PF00582:UspA; PRINTS:PR01438:Universal stress protein A; SUPERFAMILY:SSF52402:No Description.
       0.732
AHY47786.1
DoxX; COG:COG2259: Predicted membrane protein [Function unknown]; Pfam:PF07681:Uncharacterised protein family YphA.
       0.562
ribBA
ribA: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.400
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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