STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47787.1COG:COG1707: ACT domain-containing protein [General function prediction only]; Pfam:PF13291:ACT domain; Pfam:PF13291:ACT domain; PIRSF:PIRSF006363:Uncharacterised conserved protein UCP006363, ACT-type; SUPERFAMILY:SSF52172:CheY-like superfamily. (260 aa)    
Predicted Functional Partners:
AHY47788.1
Cobalamin-independent synthase, Catalytic domain; COG:COG0620: Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]; Pfam:PF01717:Methionine synthase, vitamin-B12 independent; SUPERFAMILY:SSF51726:No Description;MetaCyc: PWY-702; UniPathway: UPA00051.
  
    0.797
AHY46383.1
COG:COG0281: Malic enzyme [Energy production and conversion]; Pfam:PF03949:Malic enzyme, NAD-binding; Pfam:PF03949:Malic enzyme, NAD-binding; PIRSF:PIRSF000106:Malic oxidoreductase; PRINTS:PR00072:Malic oxidoreductase; ProSitePatterns:PS00331:Malic enzyme, conserved site; SMART:SM00919:Malic enzyme, NAD-binding; SUPERFAMILY:SSF51735:No Description.
  
    0.657
AHY47038.1
TIGRFAM:TIGR01469:Uroporphyrin-III C-methyltransferase; COG:COG0007: Uroporphyrinogen-III methylase [Coenzyme metabolism]; Pfam:PF02602:Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; ProSitePatterns:PS00840:Uroporphiryn-III C-methyltransferase, conserved site; SUPERFAMILY:SSF53790:Tetrapyrrole methylase;KEGG: 00860; MetaCyc: PWY-5194; MetaCyc: PWY-5196; UniPathway: UPA00148; UniPathway: UPA00148; UniPathway: UPA00262; UniPathway: UPA00262; UniPathway: UPA00262; cobA_cysG_Cterm.
   
    0.596
AHY47789.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.511
alaS
alaS: alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.500
AHY47786.1
DoxX; COG:COG2259: Predicted membrane protein [Function unknown]; Pfam:PF07681:Uncharacterised protein family YphA.
       0.479
AHY46006.1
COG:COG0075: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; PIRSF:PIRSF000524:Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase; ProSitePatterns:PS00595:Aminotransferase class-V pyridoxal-phosphate binding site; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase.
   
    0.405
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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