STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47798.1AsnC-type helix-turn-helix domain; COG:COG1522: Transcriptional regulators [Transcription]; Pfam:PF13404:AsnC-type HTH domain; SMART:SM00344:Transcription regulator AsnC-type; SUPERFAMILY:SSF46785:No Description. (356 aa)    
Predicted Functional Partners:
AHY47038.1
TIGRFAM:TIGR01469:Uroporphyrin-III C-methyltransferase; COG:COG0007: Uroporphyrinogen-III methylase [Coenzyme metabolism]; Pfam:PF02602:Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; ProSitePatterns:PS00840:Uroporphiryn-III C-methyltransferase, conserved site; SUPERFAMILY:SSF53790:Tetrapyrrole methylase;KEGG: 00860; MetaCyc: PWY-5194; MetaCyc: PWY-5196; UniPathway: UPA00148; UniPathway: UPA00148; UniPathway: UPA00262; UniPathway: UPA00262; UniPathway: UPA00262; cobA_cysG_Cterm.
 
  
 0.708
AHY47919.1
TIGRFAM:TIGR03962:Mycofactocin, radical SAM peptide maturase; COG:COG0535: Predicted Fe-S oxidoreductases [General function prediction only]; Pfam:PF04055:Radical SAM; PIRSF:PIRSF037420:Radical SAM coenzyme PQQ biosynthesis protein E/heme D1 biosynthesis NirJ; SUPERFAMILY:SSF102114:No Description; mycofact_rSAM.
 
  
 0.686
AHY47423.1
Hypothetical protein; COG:COG3253: Uncharacterized conserved protein [Function unknown]; Pfam:PF06778:Chlorite dismutase; Pfam:PF06778:Chlorite dismutase; SUPERFAMILY:SSF54909:Dimeric alpha-beta barrel.
 
    
 0.671
AHY46311.1
COG:COG2406: Protein distantly related to bacterial ferritins [General function prediction only]; Pfam:PF00210:Ferritin/DPS protein domain; Pfam:PF00210:Ferritin/DPS protein domain; SUPERFAMILY:SSF47240:Ferritin-like superfamily; Belongs to the Dps family.
  
     0.664
AHY47013.1
O-Antigen ligase; COG:COG3063: Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF04932:O-antigen ligase-related; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
  
  
 0.636
AHY47837.1
COG:COG0069: Glutamate synthase domain 2 [Amino acid transport and metabolism]; Pfam:PF01645:Glutamate synthase, central-C; ProSiteProfiles:PS51278:Glutamine amidotransferase type 2 domain; SUPERFAMILY:SSF51395:No Description;UniPathway: UPA00045.
     
 0.537
AHY46980.1
Heavy metal translocating P-type ATPase; TIGRFAM:TIGR01525:Cation-transporting P-type ATPase, subfamily IB; COG:COG2217: Cation transport ATPase [Inorganic ion transport and metabolism]; Pfam:PF00122:P-type ATPase, A domain; PRINTS:PR00119:Cation-transporting P-type ATPase; ProSitePatterns:PS01047:Heavy-metal-associated, conserved site; ProSiteProfiles:PS50846:Heavy metal-associated domain, HMA; SUPERFAMILY:SSF56784:HAD-like domain; ATPase-IB_hvy.
     
 0.509
AHY47799.1
TIGRFAM:TIGR00758:Uracil-DNA glycosylase, family 4 domain; COG:COG1573: Uracil-DNA glycosylase [DNA replication recombination and repair]; Pfam:PF03167:Uracil-DNA glycosylase-like; SMART:SM00987:UreE urease accessory protein, C-terminal domain; SUPERFAMILY:SSF52141:Uracil-DNA glycosylase-like; UDG_fam4.
       0.448
AHY47073.1
Type I phosphodiesterase / nucleotide pyrophosphatase; COG:COG1524: Uncharacterized proteins of the AP superfamily [General function prediction only]; Pfam:PF01663:Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SUPERFAMILY:SSF53649:Alkaline-phosphatase-like, core domain.
 
     0.410
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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