STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47807.1Anti-sigma-K factor rskA; COG:COG5343: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF10099:Anti-sigma K factor RskA. (279 aa)    
Predicted Functional Partners:
AHY47808.1
TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1595: DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; ProSitePatterns:PS01063:RNA polymerase sigma factor 70, ECF, conserved site; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2.
 
 
 0.939
AHY46894.1
TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1595: DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; ProSitePatterns:PS01063:RNA polymerase sigma factor 70, ECF, conserved site; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2.
 
 
 0.762
AHY47809.1
TIGRFAM:TIGR01167:LPXTG cell wall anchor domain; Pfam:PF14344:Domain of unknown function DUF4397; LPXTG_anchor.
 
 
 
 0.721
AHY45557.1
TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1595: DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.584
AHY45718.1
TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1595: DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.584
AHY46042.1
TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1595: DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; ProSitePatterns:PS01063:RNA polymerase sigma factor 70, ECF, conserved site; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2.
  
 
 0.584
AHY47497.1
TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1595: DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.584
AHY46825.1
Pfam:PF12773:Double zinc ribbon.
  
     0.468
AHY46312.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
     0.427
AHY47822.1
Pfam:PF14344:Domain of unknown function DUF4397.
  
 
 
 0.421
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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