STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47830.1COG:COG2378: Predicted transcriptional regulator [Transcription]; Pfam:PF13280:WYL domain; Pfam:PF13280:WYL domain; PIRSF:PIRSF016838:No Description. (322 aa)    
Predicted Functional Partners:
AHY47831.1
COG:COG2378: Predicted transcriptional regulator [Transcription]; Pfam:PF13280:WYL domain; Pfam:PF13280:WYL domain; PIRSF:PIRSF016838:No Description.
     0.986
AHY47829.1
UvrD/REP helicase N-terminal domain; COG:COG0210: Superfamily I DNA and RNA helicases [DNA replication recombination and repair]; Pfam:PF00580:UvrD-like Helicase, ATP-binding domain; ProSiteProfiles:PS51217:DNA helicase, UvrD-like, C-terminal; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; Belongs to the helicase family. UvrD subfamily.
     
 0.815
AHY47828.1
UvrD-like helicase C-terminal domain; COG:COG0210: Superfamily I DNA and RNA helicases [DNA replication recombination and repair]; Pfam:PF13361:DNA helicase, UvrD-like, C-terminal; ProSiteProfiles:PS51217:DNA helicase, UvrD-like, C-terminal; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; Belongs to the helicase family. UvrD subfamily.
       0.636
rpoB
rpoB: DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.550
rpoZ
rpoZ: DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.537
rpoA
rpoA: DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.537
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.537
AHY47832.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.499
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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