STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47842.1COG:COG1917: Uncharacterized conserved protein contains double-stranded beta-helix domain [Function unknown]; Pfam:PF07883:Cupin 2, conserved barrel; Pfam:PF07883:Cupin 2, conserved barrel; SUPERFAMILY:SSF51182:RmlC-like cupin domain. (130 aa)    
Predicted Functional Partners:
AHY47841.1
PhoD-like phosphatase; COG:COG3540: Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]; Pfam:PF09423:Alkaline phosphatase D-related; SUPERFAMILY:SSF56300:No Description.
       0.773
AHY47840.1
COG:COG0589: Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]; Pfam:PF00582:UspA; PRINTS:PR01438:Universal stress protein A; SUPERFAMILY:SSF52402:No Description.
       0.522
crcB
CrcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.459
crcB-2
Integral membrane protein possibly involved in chromosome condensation; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.459
AHY47845.1
Hypothetical protein; COG:COG1993: Uncharacterized conserved protein [Function unknown]; Pfam:PF02641:Domain of unknown function DUF190; Pfam:PF02641:Domain of unknown function DUF190; SUPERFAMILY:SSF54913:Nitrogen regulatory PII-like, alpha/beta.
       0.459
AHY47846.1
Hypothetical protein; COG:COG1993: Uncharacterized conserved protein [Function unknown]; Pfam:PF02641:Domain of unknown function DUF190; Pfam:PF02641:Domain of unknown function DUF190; SUPERFAMILY:SSF54913:Nitrogen regulatory PII-like, alpha/beta.
       0.459
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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