STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47928.1TIGRFAM:TIGR02454:ABC transporter CbiQ family; COG:COG0619: ABC-type cobalt transport system permease component CbiQ and related transporters [Inorganic ion transport and metabolism]; Pfam:PF02361:ABC/ECF transporter, transmembrane component; CbiQ_TIGR. (255 aa)    
Predicted Functional Partners:
AHY47927.1
COG:COG0310: ABC-type Co2+ transport system permease component [Inorganic ion transport and metabolism]; Pfam:PF01891:Cobalamin (vitamin B12) biosynthesis CbiM family; Pfam:PF01891:Cobalamin (vitamin B12) biosynthesis CbiM family.
 
 0.998
AHY47929.1
COG:COG1122: ABC-type cobalt transport system ATPase component [Inorganic ion transport and metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
 0.997
AHY47926.1
Pfam:PF13620:Carboxypeptidase regulatory-like domain; SUPERFAMILY:SSF49478:Collagen-binding surface protein Cna, B-type domain.
 
   
 0.953
AHY47195.1
COG:COG1122: ABC-type cobalt transport system ATPase component [Inorganic ion transport and metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
 
 0.808
AHY47601.1
Hypothetical protein; COG:COG1268: Uncharacterized conserved protein [General function prediction only]; Pfam:PF02632:BioY protein; Pfam:PF02632:BioY protein; PIRSF:PIRSF016661:BioY protein.
  
 
 0.797
AHY47925.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.
     
 0.791
AHY47930.1
Hypothetical protein; COG:COG1720: Uncharacterized conserved protein [Function unknown]; Pfam:PF01980:Uncharacterised domain UPF0066; Pfam:PF01980:Uncharacterised domain UPF0066; SUPERFAMILY:SSF118196:Uncharacterised domain UPF0066, YaeB-like domain.
       0.773
AHY47196.1
COG:COG1122: ABC-type cobalt transport system ATPase component [Inorganic ion transport and metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
 
 0.763
AHY45727.1
COG:COG4684: Predicted membrane protein [Function unknown]; Pfam:PF12822:ECF transporter, substrate-specific component; Pfam:PF12822:ECF transporter, substrate-specific component.
   
 
 0.755
AHY46104.1
precorrin-3B C17-methyltransferase; TIGRFAM:TIGR01466:Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; COG:COG1010: Precorrin-3B methylase [Coenzyme metabolism]; Pfam:PF00590:Tetrapyrrole methylase; SUPERFAMILY:SSF159672:No Description; cobJ_cbiH.
  
  
 0.707
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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