STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY48005.1TIGRFAM:TIGR01978:FeS cluster assembly SUF system, ATPase SufC; COG:COG0396: ABC-type transport system involved in Fe-S cluster assembly ATPase component [Posttranslational modification protein turnover chaperones]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase. (252 aa)    
Predicted Functional Partners:
AHY48006.1
TIGRFAM:TIGR01980:SUF system FeS cluster assembly, SufB; COG:COG0719: ABC-type transport system involved in Fe-S cluster assembly permease component [Posttranslational modification protein turnover chaperones]; Pfam:PF01458:SUF system FeS cluster assembly, SufBD; SUPERFAMILY:SSF101960:No Description.
 
 0.999
AHY48007.1
TIGRFAM:TIGR01981:SUF system FeS cluster assembly, SufD; COG:COG0719: ABC-type transport system involved in Fe-S cluster assembly permease component [Posttranslational modification protein turnover chaperones]; Pfam:PF01458:SUF system FeS cluster assembly, SufBD; SUPERFAMILY:SSF101960:No Description.
 
 0.993
AHY48010.1
TIGRFAM:TIGR01994:SUF system FeS cluster assembly, SufU scaffold; COG:COG0822: NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; SUPERFAMILY:SSF82649:No Description; SUF_scaf_2.
 
  
 0.947
AHY47291.1
COG:COG0520: Selenocysteine lyase [Amino acid transport and metabolism]; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase.
 
  
 0.822
AHY45786.1
COG:COG0520: Selenocysteine lyase [Amino acid transport and metabolism]; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase.
 
  
 0.814
AHY46451.1
COG:COG2151: Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]; Pfam:PF01883:Domain of unknown function DUF59; Pfam:PF01883:Domain of unknown function DUF59; SUPERFAMILY:SSF117916:No Description.
 
  
 0.763
mnmA
trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
  
 0.758
AHY46169.1
COG:COG0822: NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; SUPERFAMILY:SSF82649:No Description.
 
  
 0.733
AHY47700.1
TIGRFAM:TIGR00049:FeS cluster insertion protein; COG:COG0316: Uncharacterized conserved protein [Function unknown]; Pfam:PF01521:FeS cluster biogenesis; ProSitePatterns:PS01152:FeS cluster insertion, C-terminal, conserved site; SUPERFAMILY:SSF89360:FeS cluster biogenesis; Belongs to the HesB/IscA family.
  
 
 0.552
AHY48008.1
COG:COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]; Pfam:PF00355:Rieske [2Fe-2S] iron-sulphur domain; Pfam:PF00355:Rieske [2Fe-2S] iron-sulphur domain; ProSiteProfiles:PS51296:Rieske [2Fe-2S] iron-sulphur domain; SUPERFAMILY:SSF50022:Rieske [2Fe-2S] iron-sulphur domain.
       0.541
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (12%) [HD]
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