STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY48018.1Peptidase family M3; COG:COG1164: Oligoendopeptidase F [Amino acid transport and metabolism]; Pfam:PF01432:Peptidase M3A/M3B; SUPERFAMILY:SSF55486:No Description. (543 aa)    
Predicted Functional Partners:
AHY48019.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.639
AHY48017.1
COG:COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification protein turnover chaperones]; Pfam:PF00226:DnaJ domain; PRINTS:PR00625:DnaJ domain; ProSiteProfiles:PS50076:DnaJ domain; SMART:SM00271:DnaJ domain; SUPERFAMILY:SSF46565:DnaJ domain.
   
   0.619
AHY48016.1
TIGRFAM:TIGR00276:Epoxyqueuosine reductase-QueG; COG:COG1600: Uncharacterized Fe-S protein [Energy production and conversion]; Pfam:PF13484:4Fe-4S double cluster binding domain; ProSitePatterns:PS00198:4Fe-4S ferredoxin, iron-sulphur binding, conserved site; ProSiteProfiles:PS51379:4Fe-4S ferredoxin-type, iron-sulpur binding domain; SUPERFAMILY:SSF46548:Alpha-helical ferredoxin.
       0.506
metXA
Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.
   
    0.416
AHY47849.1
COG:COG2021: Homoserine acetyltransferase [Amino acid transport and metabolism]; Pfam:PF12697:Alpha/beta hydrolase family; Pfam:PF12697:Alpha/beta hydrolase family; PIRSF:PIRSF000443:Homoserine acetyltransferase; SUPERFAMILY:SSF53474:No Description; Belongs to the AB hydrolase superfamily. MetX family.
   
    0.416
AHY46189.1
TIGRFAM:TIGR00928:Adenylosuccinate lyase; COG:COG0015: Adenylosuccinate lyase [Nucleotide transport and metabolism]; Pfam:PF00206:Fumarate lyase, N-terminal; PRINTS:PR00149:Fumarate lyase; ProSitePatterns:PS00163:Fumarate lyase, conserved site; SMART:SM00998:Adenylosuccinate lyase C-terminal; SUPERFAMILY:SSF48557:L-Aspartase-like;KEGG: 00230; KEGG: 00250; MetaCyc: PWY-6123; MetaCyc: PWY-841; UniPathway: UPA00074; UniPathway: UPA00075; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.408
AHY46346.1
TIGRFAM:TIGR02426:3-carboxy-cis,cis-muconate cycloisomerase; COG:COG0015: Adenylosuccinate lyase [Nucleotide transport and metabolism]; Pfam:PF00206:Fumarate lyase, N-terminal; PRINTS:PR00149:Fumarate lyase; SMART:SM00998:Adenylosuccinate lyase C-terminal; SUPERFAMILY:SSF48557:L-Aspartase-like;KEGG: 00362; protocat_pcaB.
  
    0.408
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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