STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY48046.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (165 aa)    
Predicted Functional Partners:
AHY48045.1
COG:COG1836: Predicted membrane protein [Function unknown]; Pfam:PF01940:Protein of unknown function DUF92, TMEM19; Pfam:PF01940:Protein of unknown function DUF92, TMEM19.
       0.773
AHY48047.1
TPR repeat; COG:COG4783: Putative Zn-dependent protease contains TPR repeats [General function prediction only]; Pfam:PF13414:TPR repeat; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
       0.645
AHY48048.1
Transglycosylase SLT domain; COG:COG2951: Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis outer membrane]; Pfam:PF13406:Transglycosylase SLT domain; SUPERFAMILY:SSF53955:Lysozyme-like domain.
       0.548
AHY48049.1
TIGRFAM:TIGR00180:ParB/RepB/Spo0J partition protein family; COG:COG1475: Predicted transcriptional regulators [Transcription]; Pfam:PF02195:ParB-like nuclease; SMART:SM00470:ParB-like nuclease; SUPERFAMILY:SSF109709:No Description; parB_part; Belongs to the ParB family.
       0.404
AHY48050.1
COG:COG1192: ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Pfam:PF01656:CobQ/CobB/MinD/ParA nucleotide binding domain; Pfam:PF01656:CobQ/CobB/MinD/ParA nucleotide binding domain; PRINTS:PR00091:Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.404
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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