STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnpArnpA: ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (112 aa)    
Predicted Functional Partners:
AHY46426.1
TIGR00278: putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
  
 0.921
AHY48053.1
Membrane protein insertase, YidC/Oxa1 family; TIGRFAM:TIGR03592:Membrane insertase OXA1/ALB3/YidC; COG:COG0706: Preprotein translocase subunit YidC [Intracellular trafficking and secretion]; Pfam:PF02096:Membrane insertase OXA1/ALB3/YidC; PRINTS:PR00701:Membrane insertase OXA1/ALB3/YidC.
  
  
 0.916
AHY48052.1
COG:COG1847: Predicted RNA-binding protein [General function prediction only]; Pfam:PF13083:KH domain; Pfam:PF13083:KH domain; ProSiteProfiles:PS51061:Single-stranded nucleic acid binding R3H; SMART:SM00393:Single-stranded nucleic acid binding R3H; SUPERFAMILY:SSF82708:No Description.
 
  
 0.901
rsmG
gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.782
AHY45780.1
Membrane protein insertase, YidC/Oxa1 family; TIGRFAM:TIGR03592:Membrane insertase OXA1/ALB3/YidC; COG:COG0706: Preprotein translocase subunit YidC [Intracellular trafficking and secretion]; Pfam:PF02096:Membrane insertase OXA1/ALB3/YidC; PRINTS:PR00701:Membrane insertase OXA1/ALB3/YidC; yidC_oxa1_cterm.
  
  
 0.763
dnaA
DnaA: chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
  
 0.747
AHY45285.1
Dnan: DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiat [...]
 
  
 0.746
rex
AT-rich DNA-binding protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
  
    0.739
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
  
 0.729
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
  
 0.726
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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