STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCD1Putative carotenoid 9,10(9',10')-cleavage dioxygenase 1. (543 aa)    
Predicted Functional Partners:
CHR9
Putative switch 2.
      
 0.698
CHR8
Putative chromatin remodeling 8.
      
 0.695
zds
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
      
 0.674
LCYB
Putative lycopene beta cyclase, chloroplastic/chromoplastic.
      
 0.670
Z-ISO
Putative 15-cis-zeta-carotene isomerase protein.
      
 0.622
CYP97A3
Putative cytochrome P450, family 97, subfamily A, polypeptide 3; Belongs to the cytochrome P450 family.
      
 0.603
PSY
Putative bifunctional 15-cis-phytoene synthase, chromoplastic.
      
 0.574
LUT2
Putative lycopene beta/epsilon cyclase protein.
      
 0.525
ISPG
Putative 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (Ferredoxin) protein.
   
  
 0.521
HIC
3-ketoacyl-CoA synthase.
      
 0.493
Your Current Organism:
Helianthus annuus
NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower
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