Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSKPutative chloroplast sensor kinase. (608 aa)    
Predicted Functional Partners:
STN7
Putative STT7-like protein.
   
  
 0.689
SIGF
Putative RNApolymerase sigma-subunit F.
   
  
 0.675
A0A251U255
Putative tetratricopeptide repeat (TPR)-like superfamily protein.
      
 0.658
A0A251S9Y2
Putative RNA polymerase sigma-70 like domain-containing protein.
   
 
 0.560
A0A251SMA6
Putative RNA polymerase sigma-F type, RNA polymerase sigma-70 like domain protein.
   
 
 0.560
A0A251U524
Putative RNA polymerase sigma-70 like domain-containing protein.
   
 
 0.560
SIGA
Putative sigma factor A.
   
 
 0.560
TAP38
Putative thylakoid-associated phosphatase 38.
   
  
 0.557
A0A251V087
Putative RNA polymerase sigma-70 region 1.2.
   
  
 0.486
A0A251VQ49
Putative RNA polymerase sigma-70 like domain, RNA polymerase sigma factor, SigB/C/D/F, plastid.
   
  
 0.486
Your Current Organism:
Helianthus annuus
NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower
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