Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAD23BPutative rad23 UV excision repair protein family. (376 aa)    
Predicted Functional Partners:
ATRAD4
Putative DNA repair protein Rad4 family.
   
 0.956
A0A251RXD3
Putative PB1 domain, Zinc finger, ZZ-type, UBA-like, Next to BRCA1, central domain protein.
   
 0.951
A0A251TJ94
Putative PB1 domain, Zinc finger, ZZ-type, UBA-like, Next to BRCA1, central domain protein.
   
 0.951
AtPNG1
Putative peptide-N-glycanase 1.
    
 0.951
ATX3
Putative ataxin-3.
    
 0.929
A0A251UW67
Uncharacterized protein.
    
 0.907
ATXPD
Putative RAD3-like DNA-binding helicase protein.
    
 0.888
A0A251V3S2
Putative sugar phosphate transporter domain-containing protein.
    
 0.888
A0A251RSM5
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.887
RPT2a
Putative regulatory particle AAA-ATPase 2A; Belongs to the AAA ATPase family.
   
 0.886
Your Current Organism:
Helianthus annuus
NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower
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