STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A251RYW5Putative DEAD/DEAH box helicase domain, P-loop containing nucleoside triphosphate hydrolase. (308 aa)    
Predicted Functional Partners:
SF3B1
Putative U2 snRNP component prp10.
   
 0.953
A0A251VBB4
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.953
A0A251VKM7
Putative splicing factor, putative.
   
 0.953
A0A251SRL4
Putative hydroxyproline-rich glycoprotein family protein.
    
 0.947
A0A251TF49
Putative PHF5-like protein.
    
 0.920
A0A251UMV1
Putative PHF5-like protein.
    
 0.920
A0A251SFP5
Putative cleavage and polyadenylation specificity factor (CPSF) A subunit protein.
   
 0.869
A0A251SGZ3
Putative cleavage and polyadenylation specificity factor (CPSF) A subunit protein.
   
 0.869
A0A251U6J9
Putative cleavage/polyadenylation specificity factor, A subunit.
   
 0.869
A0A251U821
Putative cleavage/polyadenylation specificity factor, A subunit.
   
 0.869
Your Current Organism:
Helianthus annuus
NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.