STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A251S010Putative HECT domain, Ubiquitin, Ubiquitin-related domain protein. (842 aa)    
Predicted Functional Partners:
RS27A
Putative ubiquitin-40S ribosomal protein S27a.
    
0.948
A0A251T2C4
Putative zinc-binding ribosomal protein, Ubiquitin, Ubiquitin-related domain protein.
    
0.948
RPN10
Putative regulatory particle non-ATPase 10.
    
 0.940
PSMD4
Putative 26S proteasome non-ATPase regulatory subunit 4.
    
 0.940
NRPD1B
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.860
A0A251SD04
Uncharacterized protein.
    
 
 0.860
A0A251UKZ5
Putative RNA polymerase, alpha subunit.
    
 
 0.860
A0A251VE58
Uncharacterized protein.
    
 
 0.860
A0A251VRR1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.860
A0A251RZ84
Putative F-box domain-containing protein.
    
 0.827
Your Current Organism:
Helianthus annuus
NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower
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