A0A251S3B2 protein (Helianthus annuus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A251S3B2

Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site. (189 aa)

Predicted Functional Partners:

A0A251UYP1

0.796

RBL

0.795

cbbL

0.795

A0A1Y3BWP5

0.795

A0A251SUD6

0.795

A0A251UFT5

0.795

A0A251UQM1

0.795

RBL-4

0.795

RBL-5

0.795

RBL-2

0.624

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1Y3BWP5	A0A251S3B2	A0A1Y3BWP5	A0A251S3B2	Putative ribulose bisphosphate carboxylase, large subunit.	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	0.795
A0A251S3B2	A0A1Y3BWP5	A0A251S3B2	A0A1Y3BWP5	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Putative ribulose bisphosphate carboxylase, large subunit.	0.795
A0A251S3B2	A0A251SUD6	A0A251S3B2	A0A251SUD6	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Putative ribulose bisphosphate carboxylase.	0.795
A0A251S3B2	A0A251UFT5	A0A251S3B2	A0A251UFT5	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Putative ribulose bisphosphate carboxylase.	0.795
A0A251S3B2	A0A251UQM1	A0A251S3B2	A0A251UQM1	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Putative ribulose bisphosphate carboxylase, large subunit.	0.795
A0A251S3B2	A0A251UYP1	A0A251S3B2	A0A251UYP1	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Putative ribulose bisphosphate carboxylase, large subunit.	0.796
A0A251S3B2	RBL	A0A251S3B2	A0A1Y3BTI5	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Putative ribulose bisphosphate carboxylase large chain.	0.795
A0A251S3B2	RBL-2	A0A251S3B2	A0A251TG16	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Putative ribulose bisphosphate carboxylase large chain.	0.624
A0A251S3B2	RBL-4	A0A251S3B2	A0A251VF71	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Putative ribulose bisphosphate carboxylase large chain.	0.795
A0A251S3B2	RBL-5	A0A251S3B2	A0A251VLX0	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Putative ribulose bisphosphate carboxylase large chain.	0.795
A0A251S3B2	cbbL	A0A251S3B2	A0A1Y3BUS3	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.	0.795
A0A251SUD6	A0A251S3B2	A0A251SUD6	A0A251S3B2	Putative ribulose bisphosphate carboxylase.	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	0.795
A0A251SUD6	A0A251UYP1	A0A251SUD6	A0A251UYP1	Putative ribulose bisphosphate carboxylase.	Putative ribulose bisphosphate carboxylase, large subunit.	0.537
A0A251UFT5	A0A251S3B2	A0A251UFT5	A0A251S3B2	Putative ribulose bisphosphate carboxylase.	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	0.795
A0A251UQM1	A0A251S3B2	A0A251UQM1	A0A251S3B2	Putative ribulose bisphosphate carboxylase, large subunit.	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	0.795
A0A251UQM1	A0A251UYP1	A0A251UQM1	A0A251UYP1	Putative ribulose bisphosphate carboxylase, large subunit.	Putative ribulose bisphosphate carboxylase, large subunit.	0.538
A0A251UYP1	A0A251S3B2	A0A251UYP1	A0A251S3B2	Putative ribulose bisphosphate carboxylase, large subunit.	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	0.796
A0A251UYP1	A0A251SUD6	A0A251UYP1	A0A251SUD6	Putative ribulose bisphosphate carboxylase, large subunit.	Putative ribulose bisphosphate carboxylase.	0.537
A0A251UYP1	A0A251UQM1	A0A251UYP1	A0A251UQM1	Putative ribulose bisphosphate carboxylase, large subunit.	Putative ribulose bisphosphate carboxylase, large subunit.	0.538
RBL	A0A251S3B2	A0A1Y3BTI5	A0A251S3B2	Putative ribulose bisphosphate carboxylase large chain.	Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.	0.795

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Textmining

Fusion

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About