WRKY28 protein (Helianthus annuus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WRKY28

Putative WRKY DNA-binding protein 28. (322 aa)

Predicted Functional Partners:

FHY3

0.709

PDK

0.525

C2H2

0.496

anac017

0.479

A0A251RRK2

0.434

NYC1

0.431

ATBZIP9

0.401

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251RRK2	WRKY28	A0A251RRK2	A0A251S8P0	Putative calmodulin binding protein-like protein.	Putative WRKY DNA-binding protein 28.	0.434
ATBZIP9	WRKY28	A0A251V9I2	A0A251S8P0	Putative basic leucine zipper 9.	Putative WRKY DNA-binding protein 28.	0.401
C2H2	WRKY28	A0A251TY07	A0A251S8P0	Putative zinc finger protein.	Putative WRKY DNA-binding protein 28.	0.496
FHY3	WRKY28	A0A251RZN6	A0A251S8P0	Putative far-red elongated hypocotyls 3.	Putative WRKY DNA-binding protein 28.	0.709
NYC1	WRKY28	A0A251TR06	A0A251S8P0	Putative chlorophyll(Ide) b reductase NYC1 protein.	Putative WRKY DNA-binding protein 28.	0.431
PDK	WRKY28	A0A251UBT5	A0A251S8P0	Protein-serine/threonine kinase.	Putative WRKY DNA-binding protein 28.	0.525
WRKY28	A0A251RRK2	A0A251S8P0	A0A251RRK2	Putative WRKY DNA-binding protein 28.	Putative calmodulin binding protein-like protein.	0.434
WRKY28	ATBZIP9	A0A251S8P0	A0A251V9I2	Putative WRKY DNA-binding protein 28.	Putative basic leucine zipper 9.	0.401
WRKY28	C2H2	A0A251S8P0	A0A251TY07	Putative WRKY DNA-binding protein 28.	Putative zinc finger protein.	0.496
WRKY28	FHY3	A0A251S8P0	A0A251RZN6	Putative WRKY DNA-binding protein 28.	Putative far-red elongated hypocotyls 3.	0.709
WRKY28	NYC1	A0A251S8P0	A0A251TR06	Putative WRKY DNA-binding protein 28.	Putative chlorophyll(Ide) b reductase NYC1 protein.	0.431
WRKY28	PDK	A0A251S8P0	A0A251UBT5	Putative WRKY DNA-binding protein 28.	Protein-serine/threonine kinase.	0.525
WRKY28	anac017	A0A251S8P0	A0A251TFX2	Putative WRKY DNA-binding protein 28.	Putative NAC domain containing protein 17.	0.479
anac017	WRKY28	A0A251TFX2	A0A251S8P0	Putative NAC domain containing protein 17.	Putative WRKY DNA-binding protein 28.	0.479