STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A251SDW9Putative berberine/berberine-like protein. (148 aa)    
Predicted Functional Partners:
A0A251U1D9
Putative transducin/WD40 repeat-like superfamily protein.
   
  0.539
A0A251RUD1
Putative PIN domain-like family protein.
    
  0.510
A0A251RV11
Putative RNA-binding KH domain-containing protein.
    
  0.510
UTP11
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
    
  0.510
A0A251SGC7
Putative sas10/U3 ribonucleoprotein (Utp) family protein.
    
  0.507
A0A251V2H0
Putative transducin/WD40 repeat-like superfamily protein.
    
  0.507
SWA1
Putative transducin family protein / WD-40 repeat family protein.
   
 0.501
A0A251UMR9
Putative ARM repeat superfamily protein.
    
 0.491
A0A251VJW5
Putative U3 ribonucleoprotein (Utp) family protein.
    
  0.490
A0A251S7P6
Uncharacterized protein.
    
 0.480
Your Current Organism:
Helianthus annuus
NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower
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