STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A251SXL4Putative transposase, Ptta/En/Spm, plant. (580 aa)    
Predicted Functional Partners:
A0A251RUF2
Putative transducin family protein / WD-40 repeat family protein; Belongs to the WD repeat SEC13 family.
    
 0.518
SEC13
Putative SEC13-like protein; Belongs to the WD repeat SEC13 family.
    
 0.518
A0A251TBC1
Uncharacterized protein.
    
 0.505
A0A251U1B1
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.505
A0A251SGS3
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.498
A0A251SLG9
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.498
A0A251VI71
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.498
A0A251VTL1
Ribosomal protein L37; Binds to the 23S rRNA.
    
 0.498
AGT
Putative alanine:glyoxylate aminotransferase.
   
 
  0.462
A0A251RR57
Putative glu-tRNAGln amidotransferase C subunit.
    
 0.460
Your Current Organism:
Helianthus annuus
NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower
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