A0A251T0K6 protein (Helianthus annuus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A251T0K6

Putative nucleic acid-binding, OB-fold protein. (396 aa)

Predicted Functional Partners:

RPA70C

0.540

A0A251RQV1

0.540

POLD4

0.540

RPA70D

0.540

A0A251S195

0.540

A0A251SC71

0.540

A0A251SF44

0.540

POLD3

0.540

A0A251SJP6

0.540

DPOLA

0.540

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251RQV1	A0A251S195	A0A251RQV1	A0A251S195	Putative nucleic acid-binding, OB-fold protein.	Putative nucleic acid-binding, OB-fold, Replication protein A, OB domain protein.	0.540
A0A251RQV1	A0A251SC71	A0A251RQV1	A0A251SC71	Putative nucleic acid-binding, OB-fold protein.	Putative nucleic acid-binding, OB-fold protein.	0.540
A0A251RQV1	A0A251SF44	A0A251RQV1	A0A251SF44	Putative nucleic acid-binding, OB-fold protein.	Putative nucleic acid-binding, OB-fold protein.	0.540
A0A251RQV1	A0A251SJP6	A0A251RQV1	A0A251SJP6	Putative nucleic acid-binding, OB-fold protein.	Putative nucleic acid-binding, OB-fold protein.	0.540
A0A251RQV1	A0A251T0K6	A0A251RQV1	A0A251T0K6	Putative nucleic acid-binding, OB-fold protein.	Putative nucleic acid-binding, OB-fold protein.	0.540
A0A251RQV1	DPOLA	A0A251RQV1	A0A251SKE6	Putative nucleic acid-binding, OB-fold protein.	DNA polymerase.	0.540
A0A251RQV1	POLD3	A0A251RQV1	A0A251SGF4	Putative nucleic acid-binding, OB-fold protein.	Putative DNA-directed DNA polymerase.	0.540
A0A251RQV1	POLD4	A0A251RQV1	A0A251RRP5	Putative nucleic acid-binding, OB-fold protein.	Putative polymerase delta 4.	0.540
A0A251RQV1	RPA70C	A0A251RQV1	A0A251RLM7	Putative nucleic acid-binding, OB-fold protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.540
A0A251RQV1	RPA70D	A0A251RQV1	A0A251S0S4	Putative nucleic acid-binding, OB-fold protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.540
A0A251S195	A0A251RQV1	A0A251S195	A0A251RQV1	Putative nucleic acid-binding, OB-fold, Replication protein A, OB domain protein.	Putative nucleic acid-binding, OB-fold protein.	0.540
A0A251S195	A0A251SC71	A0A251S195	A0A251SC71	Putative nucleic acid-binding, OB-fold, Replication protein A, OB domain protein.	Putative nucleic acid-binding, OB-fold protein.	0.540
A0A251S195	A0A251SF44	A0A251S195	A0A251SF44	Putative nucleic acid-binding, OB-fold, Replication protein A, OB domain protein.	Putative nucleic acid-binding, OB-fold protein.	0.540
A0A251S195	A0A251SJP6	A0A251S195	A0A251SJP6	Putative nucleic acid-binding, OB-fold, Replication protein A, OB domain protein.	Putative nucleic acid-binding, OB-fold protein.	0.540
A0A251S195	A0A251T0K6	A0A251S195	A0A251T0K6	Putative nucleic acid-binding, OB-fold, Replication protein A, OB domain protein.	Putative nucleic acid-binding, OB-fold protein.	0.540
A0A251S195	DPOLA	A0A251S195	A0A251SKE6	Putative nucleic acid-binding, OB-fold, Replication protein A, OB domain protein.	DNA polymerase.	0.791
A0A251S195	POLD3	A0A251S195	A0A251SGF4	Putative nucleic acid-binding, OB-fold, Replication protein A, OB domain protein.	Putative DNA-directed DNA polymerase.	0.574
A0A251S195	POLD4	A0A251S195	A0A251RRP5	Putative nucleic acid-binding, OB-fold, Replication protein A, OB domain protein.	Putative polymerase delta 4.	0.624
A0A251S195	RPA70C	A0A251S195	A0A251RLM7	Putative nucleic acid-binding, OB-fold, Replication protein A, OB domain protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.540
A0A251S195	RPA70D	A0A251S195	A0A251S0S4	Putative nucleic acid-binding, OB-fold, Replication protein A, OB domain protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.540