STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RGTA1Putative RAB geranylgeranyl transferase alpha subunit 1. (680 aa)    
Predicted Functional Partners:
REP
Rab proteins geranylgeranyltransferase component; Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins; Belongs to the Rab GDI family.
   
 0.984
A0A251VI69
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.979
A0A251VIY0
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.979
A0A251S6D1
Putative small GTPase superfamily, Ran GTPase, P-loop containing nucleoside triphosphate hydrolase.
    
 0.646
A0A251TMQ9
Putative small GTPase superfamily, Ran GTPase, P-loop containing nucleoside triphosphate hydrolase.
    
 0.646
A0A251TVZ7
Putative small GTPase superfamily, Ran GTPase, P-loop containing nucleoside triphosphate hydrolase.
    
 0.646
A0A251UFB1
Putative small GTPase superfamily, Ran GTPase, P-loop containing nucleoside triphosphate hydrolase.
    
 0.646
RAB6
Putative ras-related small GTP-binding family protein.
    
 0.646
A0A251RLN9
Putative homeodomain-like, Myb-like domain protein.
    
 0.596
RAB5A
Putative ras-related protein Rab-5A.
    
 0.596
Your Current Organism:
Helianthus annuus
NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.