A0A251U657 protein (Helianthus annuus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A251U657

Putative nucleotidyltransferase family protein. (503 aa)

Predicted Functional Partners:

A0A251T003

0.665

EMB140

0.657

DI3L2

0.655

SDN1

0.584

A0A251RX73

0.547

A0A251S9Z9

0.547

A0A251TK88

0.519

HST

0.517

A0A251RYM5

0.513

AGO7

0.513

Your Current Organism:

Helianthus annuus

NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251RX73	A0A251U657	A0A251RX73	A0A251U657	Putative ribonuclease H-like domain, Hpc2-related domain protein.	Putative nucleotidyltransferase family protein.	0.547
A0A251RX73	DI3L2	A0A251RX73	A0A251U6N7	Putative ribonuclease H-like domain, Hpc2-related domain protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.668
A0A251RYM5	A0A251TK88	A0A251RYM5	A0A251TK88	Putative tetratricopeptide repeat (TPR)-like superfamily protein.	Putative RNA helicase, ATP-dependent, SK12/DOB1 protein.	0.996
A0A251RYM5	A0A251U657	A0A251RYM5	A0A251U657	Putative tetratricopeptide repeat (TPR)-like superfamily protein.	Putative nucleotidyltransferase family protein.	0.513
A0A251RYM5	DI3L2	A0A251RYM5	A0A251U6N7	Putative tetratricopeptide repeat (TPR)-like superfamily protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.833
A0A251S9Z9	A0A251U657	A0A251S9Z9	A0A251U657	Putative polynucleotidyl transferase, ribonuclease H-like superfamily protein.	Putative nucleotidyltransferase family protein.	0.547
A0A251S9Z9	DI3L2	A0A251S9Z9	A0A251U6N7	Putative polynucleotidyl transferase, ribonuclease H-like superfamily protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.668
A0A251T003	A0A251U657	A0A251T003	A0A251U657	Putative metallo-beta-lactamase.	Putative nucleotidyltransferase family protein.	0.665
A0A251TK88	A0A251RYM5	A0A251TK88	A0A251RYM5	Putative RNA helicase, ATP-dependent, SK12/DOB1 protein.	Putative tetratricopeptide repeat (TPR)-like superfamily protein.	0.996
A0A251TK88	A0A251U657	A0A251TK88	A0A251U657	Putative RNA helicase, ATP-dependent, SK12/DOB1 protein.	Putative nucleotidyltransferase family protein.	0.519
A0A251TK88	DI3L2	A0A251TK88	A0A251U6N7	Putative RNA helicase, ATP-dependent, SK12/DOB1 protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.913
A0A251U657	A0A251RX73	A0A251U657	A0A251RX73	Putative nucleotidyltransferase family protein.	Putative ribonuclease H-like domain, Hpc2-related domain protein.	0.547
A0A251U657	A0A251RYM5	A0A251U657	A0A251RYM5	Putative nucleotidyltransferase family protein.	Putative tetratricopeptide repeat (TPR)-like superfamily protein.	0.513
A0A251U657	A0A251S9Z9	A0A251U657	A0A251S9Z9	Putative nucleotidyltransferase family protein.	Putative polynucleotidyl transferase, ribonuclease H-like superfamily protein.	0.547
A0A251U657	A0A251T003	A0A251U657	A0A251T003	Putative nucleotidyltransferase family protein.	Putative metallo-beta-lactamase.	0.665
A0A251U657	A0A251TK88	A0A251U657	A0A251TK88	Putative nucleotidyltransferase family protein.	Putative RNA helicase, ATP-dependent, SK12/DOB1 protein.	0.519
A0A251U657	AGO7	A0A251U657	A0A251TMC6	Putative nucleotidyltransferase family protein.	Putative argonaute family protein; Belongs to the argonaute family.	0.513
A0A251U657	DI3L2	A0A251U657	A0A251U6N7	Putative nucleotidyltransferase family protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.655
A0A251U657	EMB140	A0A251U657	A0A251VAW8	Putative nucleotidyltransferase family protein.	Putative embryo defective protein.	0.657
A0A251U657	HST	A0A251U657	A0A251SIF5	Putative nucleotidyltransferase family protein.	Putative ARM repeat superfamily protein.	0.517