STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A251VDN1Putative NUP50 (Nucleoporin 50 kDa) protein. (478 aa)    
Predicted Functional Partners:
A0A251V3L1
Nuclear pore protein.
   
 0.961
A0A251T090
Putative reverse transcriptase domain, Nucleoporin, Nup155-like protein.
   
 0.896
NUP155
Putative nucleoporin.
   
 0.896
A0A251SJM1
Putative nucleoporin.
   
 0.892
A0A251TBC1
Uncharacterized protein.
   
 0.883
A0A251U1B1
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.883
A0A251RR57
Putative glu-tRNAGln amidotransferase C subunit.
   
 0.882
A0A251SRG1
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.882
A0A251SSW2
Putative zinc finger, C2H2, Poly(ADP-ribose) polymerase, catalytic domain protein.
   
 0.877
A0A251V7F3
Putative zinc finger protein-related protein.
   
 0.877
Your Current Organism:
Helianthus annuus
NCBI taxonomy Id: 4232
Other names: H. annuus, Helianthus annuus L., common sunflower
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