STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ35345.1Electron transfer flavoprotein alpha subunit apoprotein. (350 aa)    
Predicted Functional Partners:
SJZ35357.1
Electron transfer flavoprotein beta subunit.
 0.999
SJZ35367.1
Acyl-CoA dehydrogenase.
 0.999
SJZ35374.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.862
SJZ35391.1
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.844
SJZ35397.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.805
SJZ76857.1
Amino acid adenylation domain-containing protein.
  
 
 0.776
SJZ49432.1
Glutamate synthase (NADPH/NADH) small chain.
   
 
 0.667
SJZ68760.1
Glutamate synthase (NADPH/NADH) small chain.
   
 
 0.667
atpA-2
F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
  
 
 0.651
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
    0.557
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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