STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ38080.1S-layer homology domain-containing protein. (919 aa)    
Predicted Functional Partners:
SJZ77438.1
Protein of unknown function.
  
     0.771
SJZ77462.1
Hypothetical protein.
  
     0.731
SJZ87842.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain.
  
     0.727
SJZ74194.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
     0.713
SJZ50488.1
FtsX-like permease family protein.
  
     0.638
SJZ93178.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
     0.618
SJZ48936.1
ABC-type transport system, involved in lipoprotein release, permease component.
  
     0.606
SJZ80942.1
Zinc transport system substrate-binding protein.
  
  
 0.592
SJZ38086.1
Kynurenine formamidase.
 
     0.569
SKA03024.1
Nicotinamidase-related amidase.
  
    0.560
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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