STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ38539.1Hypothetical protein. (420 aa)    
Predicted Functional Partners:
SJZ38545.1
Hypothetical protein.
  
 0.983
SJZ38549.1
Uncharacterized protein.
  
 0.983
SJZ38559.1
Phosphoserine phosphatase.
       0.732
SJZ38583.1
Cobyrinic acid a,c-diamide synthase.
       0.732
SJZ38525.1
Hypothetical protein.
 
    0.692
SJZ38597.1
precorrin-6Y C5,15-methyltransferase (decarboxylating).
       0.619
SJZ38612.1
Two component transcriptional regulator, LuxR family.
       0.575
SJZ38628.1
Signal transduction histidine kinase.
       0.575
SJZ38503.1
Cysteine-rich small domain-containing protein.
       0.523
SJZ38652.1
ABC-2 family transporter protein.
       0.446
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.