STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ38808.1Xylan 1,4-beta-xylosidase. (498 aa)    
Predicted Functional Partners:
SJZ96599.1
Beta-xylosidase.
 
  
  0.934
SJZ96648.1
Beta-galactosidase.
  
  
  0.866
SJZ51264.1
Endo-1,4-beta-xylanase, GH35 family.
  
   
 0.723
SJZ95502.1
Arabinogalactan endo-1,4-beta-galactosidase.
  
     0.679
SJZ45019.1
Arabinogalactan endo-1,4-beta-galactosidase.
  
     0.674
SJZ82567.1
Endo-1,4-beta-xylanase, GH35 family.
  
   
 0.671
SJZ41620.1
Arabinogalactan endo-1,4-beta-galactosidase.
  
     0.665
SJZ38790.1
Hypothetical protein.
       0.645
SJZ38815.1
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase.
       0.642
SJZ37831.1
Glycosyl hydrolases family 43.
 
  
 0.622
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.