STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ42599.1Ribosomal protein S18 acetylase RimI. (142 aa)    
Predicted Functional Partners:
SKA03142.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.752
SJZ42542.1
Putative peptidoglycan lipid II flippase.
       0.671
SJZ42615.1
Sugar-transfer associated ATP-grasp.
       0.639
SJZ58559.1
Acetyltransferase (GNAT) domain-containing protein.
  
    0.626
mutS2
DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
       0.460
SJZ42490.1
Signal transduction histidine kinase.
       0.439
SJZ42508.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.439
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.