STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ45311.1Leucine rich repeat-containing protein. (237 aa)    
Predicted Functional Partners:
SJZ45299.1
Type I restriction enzyme, S subunit.
       0.773
SJZ91180.1
Leucine rich repeat-containing protein.
  
     0.724
SJZ58593.1
Tetratricopeptide repeat-containing protein.
  
 
 0.546
SJZ45201.1
Site-specific recombinase XerD.
   
   0.527
SJZ45226.1
Protein of unknown function.
       0.504
SJZ93455.1
Putative ABC transport system permease protein.
 
 
   0.456
secF
SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
   
  0.441
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.425
SJZ48430.1
Protein of unknown function.
  
 
  0.422
SKA00100.1
Tetratricopeptide repeat-containing protein.
   
 0.422
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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