STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ45967.1Putative ABC transport system ATP-binding protein. (220 aa)    
Predicted Functional Partners:
SJZ45982.1
Putative ABC transport system permease protein.
 
 0.995
SJZ93455.1
Putative ABC transport system permease protein.
 
 0.979
SJZ61805.1
Putative ABC transport system permease protein.
  0.961
SJZ88248.1
Putative ABC transport system permease protein.
 
  0.860
SJZ72108.1
Putative ABC transport system permease protein.
  
 0.740
SJZ45949.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
     0.729
SJZ45322.1
ABC-type transport system, involved in lipoprotein release, permease component.
  
 
  0.711
SKA00976.1
ABC-2 type transport system ATP-binding protein.
  
  
  0.673
SJZ61906.1
HlyD family secretion protein.
  
  0.668
SJZ60921.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
   
  0.658
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.