STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ51164.1Transcriptional regulator, PadR family. (106 aa)    
Predicted Functional Partners:
SJZ51179.1
Uncharacterized membrane protein.
 
    0.918
SJZ51198.1
DUF4097 and DUF4098 domain-containing protein YvlB.
       0.790
SJZ51141.1
Energy-coupling factor transport system substrate-specific component.
       0.499
SJZ51219.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.433
SJZ81113.1
ABC-2 family transporter protein.
 
     0.422
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.