STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ58442.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (223 aa)    
Predicted Functional Partners:
SJZ35482.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
  
 0.999
SJZ71749.1
Signal transduction histidine kinase.
0.994
SJZ70640.1
Signal transduction histidine kinase.
 
0.993
SJZ58467.1
Signal transduction histidine kinase.
  0.972
SJZ73937.1
Two-component system, NarL family, sensor histidine kinase DegS.
  
 0.967
SJZ35874.1
Hypothetical protein.
  
 0.956
SJZ38276.1
Two-component system, OmpR family, sensor histidine kinase VanS.
  
  0.895
SJZ52076.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  0.892
SJZ50819.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
  0.886
SJZ42490.1
Signal transduction histidine kinase.
  0.883
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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