STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ58807.1Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. (119 aa)    
Predicted Functional Partners:
SJZ58832.1
Hypothetical protein.
 
  
 0.978
SJZ34898.1
Hypothetical protein.
 
  
 0.908
SJZ58847.1
ATP-dependent DNA helicase RecG.
       0.747
SJZ40469.1
EDD domain protein, DegV family.
 
     0.715
SJZ81073.1
EDD domain protein, DegV family.
 
     0.712
SJZ34887.1
EDD domain protein, DegV family.
 
     0.695
SJZ66758.1
Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family.
  
   
 0.552
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
       0.533
SJZ67681.1
Uncharacterized protein, UPF0297 family.
  
    0.491
SJZ58855.1
Endoglucanase.
       0.457
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.