Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ59760.1 | SJZ59779.1 | SAMN02745110_01010 | SAMN02745110_01011 | NTE family protein. | Cytidylate kinase. | 0.741 |
SJZ59760.1 | SJZ59802.1 | SAMN02745110_01010 | SAMN02745110_01012 | NTE family protein. | Glycosyl hydrolases family 43. | 0.723 |
SJZ59779.1 | SJZ59760.1 | SAMN02745110_01011 | SAMN02745110_01010 | Cytidylate kinase. | NTE family protein. | 0.741 |
SJZ59779.1 | SJZ59802.1 | SAMN02745110_01011 | SAMN02745110_01012 | Cytidylate kinase. | Glycosyl hydrolases family 43. | 0.752 |
SJZ59779.1 | cmk | SAMN02745110_01011 | SAMN02745110_00992 | Cytidylate kinase. | Cytidylate kinase. | 0.829 |
SJZ59779.1 | rplA | SAMN02745110_01011 | SAMN02745110_02060 | Cytidylate kinase. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.641 |
SJZ59779.1 | rplJ | SAMN02745110_01011 | SAMN02745110_01993 | Cytidylate kinase. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.640 |
SJZ59779.1 | rplK | SAMN02745110_01011 | SAMN02745110_02061 | Cytidylate kinase. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.650 |
SJZ59779.1 | rplN | SAMN02745110_01011 | SAMN02745110_01625 | Cytidylate kinase. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.652 |
SJZ59779.1 | rplV | SAMN02745110_01011 | SAMN02745110_01630 | Cytidylate kinase. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.663 |
SJZ59779.1 | rplX | SAMN02745110_01011 | SAMN02745110_01624 | Cytidylate kinase. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.652 |
SJZ59779.1 | rpsL | SAMN02745110_01011 | SAMN02745110_02001 | Cytidylate kinase. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.641 |
SJZ59802.1 | SJZ59760.1 | SAMN02745110_01012 | SAMN02745110_01010 | Glycosyl hydrolases family 43. | NTE family protein. | 0.723 |
SJZ59802.1 | SJZ59779.1 | SAMN02745110_01012 | SAMN02745110_01011 | Glycosyl hydrolases family 43. | Cytidylate kinase. | 0.752 |
cmk | SJZ59779.1 | SAMN02745110_00992 | SAMN02745110_01011 | Cytidylate kinase. | Cytidylate kinase. | 0.829 |
rplA | SJZ59779.1 | SAMN02745110_02060 | SAMN02745110_01011 | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Cytidylate kinase. | 0.641 |
rplA | rplJ | SAMN02745110_02060 | SAMN02745110_01993 | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
rplA | rplK | SAMN02745110_02060 | SAMN02745110_02061 | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
rplA | rplN | SAMN02745110_02060 | SAMN02745110_01625 | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
rplA | rplV | SAMN02745110_02060 | SAMN02745110_01630 | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
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