STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ61113.1D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). (328 aa)    
Predicted Functional Partners:
SJZ36820.1
Penicillin-binding protein 1A.
  
 
 0.852
SJZ61099.1
Hypothetical protein.
       0.774
SJZ61077.1
Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
    0.726
SJZ61132.1
Methylglyoxal synthase.
       0.669
SJZ61173.1
Penicillin-binding protein 2.
  
 
 0.660
SJZ61064.1
Cell division inhibitor SepF.
  
    0.646
SJZ61157.1
Rod shape determining protein RodA; Belongs to the SEDS family.
 
   
 0.629
SJZ90617.1
SH3 domain-containing protein.
 
  
 0.626
SKA05473.1
Cpl-7 lysozyme C-terminal domain-containing protein.
  
 
 0.610
SKA05516.1
Phage tail tape measure protein, TP901 family, core region.
  
 
 0.610
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.