Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ45112.1 | SJZ81267.1 | SAMN02745110_00537 | SAMN02745110_01674 | Elongation factor Tu. | Hypothetical protein. | 0.991 |
SJZ45112.1 | atpA-2 | SAMN02745110_00537 | SAMN02745110_00797 | Elongation factor Tu. | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.957 |
SJZ45112.1 | ispH | SAMN02745110_00537 | SAMN02745110_00993 | Elongation factor Tu. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.910 |
SJZ45112.1 | rplL | SAMN02745110_00537 | SAMN02745110_01994 | Elongation factor Tu. | Large subunit ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.924 |
SJZ45112.1 | rplS | SAMN02745110_00537 | SAMN02745110_00994 | Elongation factor Tu. | Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.986 |
SJZ45112.1 | rpsB | SAMN02745110_00537 | SAMN02745110_01199 | Elongation factor Tu. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.987 |
SJZ45112.1 | rpsI | SAMN02745110_00537 | SAMN02745110_01591 | Elongation factor Tu. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.976 |
SJZ81229.1 | SJZ81267.1 | SAMN02745110_01672 | SAMN02745110_01674 | Signal transduction histidine kinase. | Hypothetical protein. | 0.858 |
SJZ81267.1 | SJZ45112.1 | SAMN02745110_01674 | SAMN02745110_00537 | Hypothetical protein. | Elongation factor Tu. | 0.991 |
SJZ81267.1 | SJZ81229.1 | SAMN02745110_01674 | SAMN02745110_01672 | Hypothetical protein. | Signal transduction histidine kinase. | 0.858 |
SJZ81267.1 | atpA-2 | SAMN02745110_01674 | SAMN02745110_00797 | Hypothetical protein. | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.963 |
SJZ81267.1 | frr | SAMN02745110_01674 | SAMN02745110_01268 | Hypothetical protein. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.840 |
SJZ81267.1 | ispH | SAMN02745110_01674 | SAMN02745110_00993 | Hypothetical protein. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.906 |
SJZ81267.1 | rplL | SAMN02745110_01674 | SAMN02745110_01994 | Hypothetical protein. | Large subunit ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.769 |
SJZ81267.1 | rplS | SAMN02745110_01674 | SAMN02745110_00994 | Hypothetical protein. | Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.783 |
SJZ81267.1 | rpsB | SAMN02745110_01674 | SAMN02745110_01199 | Hypothetical protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.780 |
SJZ81267.1 | rpsI | SAMN02745110_01674 | SAMN02745110_01591 | Hypothetical protein. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.763 |
SJZ81267.1 | tuf | SAMN02745110_01674 | SAMN02745110_02004 | Hypothetical protein. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.991 |
atpA-2 | SJZ45112.1 | SAMN02745110_00797 | SAMN02745110_00537 | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | Elongation factor Tu. | 0.957 |
atpA-2 | SJZ81267.1 | SAMN02745110_00797 | SAMN02745110_01674 | F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | Hypothetical protein. | 0.963 |
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