STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ83209.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
SJZ83117.1
Cell division protein FtsQ.
 
     0.884
SJZ83205.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
 
     0.779
SJZ49504.1
Hypothetical protein.
  
     0.774
SJZ73794.1
Protein of unknown function.
  
     0.774
SJZ94990.1
Hypothetical protein.
  
     0.774
SJZ53922.1
Hypothetical protein.
  
     0.773
SJZ49469.1
Hypothetical protein.
  
     0.772
SJZ43285.1
Hypothetical protein.
  
     0.771
SJZ49543.1
Hypothetical protein.
  
     0.771
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.771
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.