STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ85219.1CHC2 zinc finger. (336 aa)    
Predicted Functional Partners:
SJZ85350.1
Replicative DNA helicase.
 
 0.989
SJZ49651.1
Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
 0.983
SJZ89412.1
DNA polymerase I.
 
 
 0.948
SJZ68105.1
Replication restart DNA helicase PriA.
  
  
  0.912
SJZ84997.1
DNA polymerase-3 subunit alpha.
 
 
 0.802
SJZ85199.1
Hypothetical protein.
       0.773
SJZ85233.1
Hypothetical protein.
       0.773
SJZ85249.1
PD-(D/E)XK nuclease superfamily protein.
  
    0.773
SJZ36641.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
 
 
 0.751
sigA
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
 
  
 0.745
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.