STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ93213.1nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs. (522 aa)    
Predicted Functional Partners:
SJZ65415.1
Phosphoesterase RecJ domain-containing protein.
  
  
  0.844
SJZ88299.1
Extracellular solute-binding protein.
 
     0.624
SJZ93654.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
 
     0.592
SJZ67847.1
Polymer-forming protein.
 
     0.583
SJZ36993.1
Putative aldouronate transport system substrate-binding protein.
 
     0.580
SKA03185.1
Protein of unknown function with HXXEE motif-containing protein.
  
     0.558
SJZ52932.1
Acetyltransferase (GNAT) family protein.
  
     0.520
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
    0.489
SJZ43861.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.483
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
       0.461
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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