STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ95613.1Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling). (345 aa)    
Predicted Functional Partners:
SJZ95574.1
Phosphoglycerol transferase MdoB.
       0.636
SJZ95591.1
Acylphosphatase.
       0.636
SJZ56808.1
butyryl-CoA:acetate CoA-transferase.
  
  
  0.619
SJZ59375.1
Oxaloacetate decarboxylase, alpha subunit.
   
 
  0.593
SJZ95562.1
DNA gyrase subunit A.
       0.442
SJZ95625.1
3D (Asp-Asp-Asp) domain-containing protein.
  
    0.428
SJZ65618.1
YceG-like family protein.
  
     0.406
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.