STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ99939.1Hypothetical protein. (251 aa)    
Predicted Functional Partners:
SJZ99912.1
ABC-2 type transport system ATP-binding protein.
 
     0.863
SJZ82540.1
Glycopeptide antibiotics resistance protein.
  
     0.597
SJZ99950.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.494
SJZ39223.1
NlpC/P60 family protein.
  
     0.464
SJZ99893.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.450
SJZ99968.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
       0.442
SJZ99986.1
Hypothetical protein.
       0.418
SJZ99869.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.407
Your Current Organism:
Eubacterium ruminantium
NCBI taxonomy Id: 42322
Other names: ATCC 17233, DSM 20704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.